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26 Publications · 60 Citations · h-index 5

Research
Papers

Building domain-agnostic frameworks for understanding complex dynamical systems — applied to the brain as the world's most complex test case.

2026
FUNCTIONAL SYSTEMS · PREPRINT
Functional Inertia Reveals History-Dependent Organization of Large-Scale Brain Dynamics

Introduces functional inertia — a representation-agnostic constraint measuring how accumulated prior states resist ongoing reorganization. Three recurrent dynamical regimes (Locked / Stabilizing / Shifting) and a system-level inertial magnitude with opposite cognitive signatures across diagnostic contexts. Full mediation proves cumulative integration is essential.

Lead AuthorInertial State-SpaceDynamic SystemsState EstimationSchizophrenia
Preprint · 2026
w/ Calhoun
2026
OPERATOR THEORY · BIORXIV · 2 CITATIONS
Dynamic Co-Modulation (DyCoM): A Unified Operator Framework for Dynamic Connectivity in Neuroimaging

Introduces DyCoM — a compact operator-level framework expressing dynamic connectivity estimators as compositions of four fundamental signal processing operations. Domain-agnostic by design: applies to any multivariate time series. Resolves previously conflicting neurobiological signatures through principled operator decomposition.

Lead AuthorOperator FrameworkSignal ProcessingDomain-Agnostic
bioRxiv · 2026
w/ Soleimani, Calhoun
2026
GRAPH NETWORKS · ARXIV · 2 CITATIONS
KOCOBrain: Kuramoto-Guided Graph Network for Uncovering Structure-Function Coupling in Adolescent Prenatal Drug Exposure

Kuramoto oscillator-informed graph neural network uncovering structure-function coupling in children with prenatal drug exposure. Links dynamic network topology to neurodevelopmental trajectories using physics-inspired graph learning.

Co-AuthorGraph NetworksOscillator DynamicsNeurodevelopment
arXiv · 2026
Mazumder, Wu, Wiafe et al.
2026
PUBLISHED · NETWORK NEUROSCIENCE · 5 CITATIONS
A Novel Framework to Quantify Dynamic Convergence and Divergence of Overlapping Brain States Characterizing Four Psychiatric Disorders

Novel framework quantifying dynamic convergence and divergence across overlapping brain states in four psychiatric disorders simultaneously. Demonstrates shared and disorder-specific dynamic signatures. Published in Network Neuroscience, 10(1):93–117.

Co-AuthorDynamic StatesMulti-disorderPublished
Network Neuroscience
10(1):93–117 · 2026
Soleimani, Wiafe et al.
2026
KOOPMAN DYNAMICS · ARXIV
NeuroBRIDGE: Behavior-Conditioned Koopman Dynamics with Riemannian Alignment for Early Substance Use Initiation Prediction from Longitudinal Functional Connectome

Koopman operator dynamics with Riemannian manifold alignment for predicting early substance use initiation from longitudinal connectome data. Bridges behavior-conditioned latent dynamics with brain connectivity trajectories using geometric deep learning.

Co-AuthorKoopman OperatorsRiemannian GeometryLongitudinal
arXiv · 2026
Mazumder, Wiafe et al.
2026
GRAPH ATTENTION · ARXIV
Learning Structural-Functional Brain Representations through Multi-Scale Adaptive Graph Attention for Cognitive Insight

Multi-scale adaptive graph attention network learning joint structural-functional brain representations for cognitive insight. Links anatomical connectivity to functional dynamics at multiple spatial scales via adaptive attention mechanisms.

Co-AuthorGraph AttentionMulti-modalCognition
arXiv · 2026
Mazumder, Wiafe et al.
2026
STRUCTURAL MRI · BIORXIV · 1 CITATION
Structural Co-Modulation: An Individualized Measure of Inter-Component Interactions in Source-Based Morphometry

Adapts the DyCoM co-modulation operator principle to structural neuroimaging — introducing individualized inter-component interaction measures in source-based morphometry. Demonstrates operator-level decomposition generalizes from functional to structural imaging.

Co-AuthorOperator ExtensionStructural MRIIndividualized
bioRxiv · 2026
Kotoski, Soleimani, Wiafe et al.
2026
PUBLISHED · BRAIN SCIENCES
Activity Patterns in Relation to Dynamic Functional Network States: A Longitudinal Feasibility Study of Brain–Behavior Associations in Young Adults

Longitudinal study linking activity patterns to dynamic functional network states. Demonstrates brain-behavior associations evolve with training, with functional network regime occupancy providing a stable organizing framework across time.

Co-AuthorLongitudinalBrain-BehaviorPublished
Brain Sciences
16(3):327 · 2026
Soleimani, Wiafe et al.
2026
NEUROPLASTICITY · PREPRINT
Training-Induced Plasticity in Dynamic Functional Network States: Divergence and Occupancy Associations with Behavioral and Cognitive Measures in Healthy Young Adults

Training-induced plasticity expressed through shifts in dynamic network state occupancy and divergence metrics. Associates regime engagement changes with behavioral and cognitive improvement in healthy young adults over training.

Co-AuthorNeuroplasticityDynamic StatesCognition
Preprint · 2026
Soleimani, Wiafe et al.
2026
DEPRESSION · BIORXIV
Functional Connectivity Changes in Major Depressive Disorder

Characterizes functional connectivity alterations in major depressive disorder, identifying network-level disruptions and dynamic state changes as candidate biomarkers for clinical expression and treatment stratification.

Co-AuthorDepressionFunctional ConnectivityClinical Biomarkers
bioRxiv · 2026
Sridhar, Wiafe, Baker, Calhoun
2025
SIGNAL ALIGNMENT · ICASSP 2026 (ACCEPTED) · 1 CITATION
Warp Quantification Analysis: A Framework for Path-Based Signal Alignment Metrics

Introduces Warp Quantification Analysis (WQA) — a comprehensive framework formalizing path-based signal alignment metrics. Unifies DTW distance, warp deviation variance (WDV), path length ratio, and alignment cost into a coherent, general-purpose analysis system applicable to any time-series alignment problem.

Lead AuthorICASSP 2026Temporal AlignmentWQASignal Metrics
arXiv · 2025
ICASSP 2026
w/ Calhoun
2025
DIRECTIONAL COUPLING · ARXIV · 1 CITATION
Complex-Valued Phase Synchrony Reveals Directional Coupling in fMRI and Tracks Medication Effects

Proposes CVPS — a complex-valued phase synchrony framework using an adaptive wavelet that preserves both cosine and sine components, recovering true phase offsets and directional lead-lag structure. Reveals cortical drivers consistent with pharmacological receptor targets. PLV discards direction; CVPS keeps it.

Lead AuthorPhase SynchronyDirectional CouplingWavelet Analysis
arXiv · 2025
w/ Soleimani, Miller, Faghiri et al.
2025
DYNAMIC AMPLITUDE · BIORXIV · 3 CITATIONS
Aberrant Recovery of Timescale-Aligned Amplitude Balance Links to Symptoms and Cognition in Schizophrenia

Normalized DTW framework for capturing timescale-aligned amplitude balance across brain networks. Healthy brains maintain balanced signal distribution; schizophrenia shows aberrant recovery patterns in this balance that directly link to positive/negative symptom severity and cognitive performance.

Lead AuthorAmplitude DynamicsDTWSignal BalanceSchizophrenia
bioRxiv · 2025
w/ Kinsey, Soleimani et al.
2025
STATE-SPACE RECONSTRUCTION · ARXIV
Robust State-Space Reconstruction of Brain Dynamics via Bootstrap Monte Carlo SSA

Bootstrap Monte Carlo Singular Spectrum Analysis for robust state-space reconstruction of brain dynamics. Provides noise-resilient latent trajectory estimation with full uncertainty quantification — a principled approach directly applicable to any noisy multivariate dynamical system.

Lead AuthorState-SpaceMonte CarloUncertainty Quantification
arXiv · 2025
w/ Hinsley, Calhoun
2025
SIGNAL PROCESSING · BRAIN CONNECTIVITY · 12 CITATIONS
Studying Time-Resolved Functional Connectivity via Communication Theory: On the Complementary Nature of Phase Synchronization and Sliding Window Pearson Correlation

Communication-theoretic analysis proving phase synchronization and SWPC are complementary estimators, not competing ones. Phase methods capture weak high-frequency coupling; amplitude methods capture strong low-frequency dynamics. Method choice encodes a computational prior about signal structure.

Lead AuthorCommunication TheoryPhase SynchronyPublished
Brain Connectivity
15(8):300–318 · 2025
w/ Asante, Calhoun, Faghiri
2025
NORMALIZED DTW · IEEE EMBC 2025 · 6 CITATIONS
Normalized Dynamic Time Warping Increases Sensitivity in Differentiating Functional Network Connectivity in Schizophrenia

Normalization of DTW distances substantially improves sensitivity for detecting functional network connectivity differences in schizophrenia. Establishes normalized DTW as a more clinically powerful connectivity metric than standard correlation approaches.

Lead AuthorNormalized DTWSchizophreniaIEEE EMBC
IEEE EMBC 2025
w/ Kinsey, Iraji, Miller, Calhoun
2025
FUNCTIONAL INERTIA · BIORXIV
Functional Inertia Index of Memory-Retaining Brain Dynamics: A Measure of Large-Scale Brain Adaptability

Early formulation of the functional inertia index through memory-retaining dynamics. Establishes adaptability as the inverse of inertia — a measurable, continuous axis for quantifying how readily any dynamical system reorganizes from its accumulated history.

Lead AuthorFunctional InertiaAdaptabilityMemory Dynamics
bioRxiv · 2025
w/ Calhoun
2025
SIGNAL BALANCE · BIORXIV
Timescale-Normalized fMRI Reveals Disrupted Dynamic Signal-Energy Balance in Schizophrenia

Timescale normalization via DTW reveals systematic disruptions in dynamic signal-energy balance in schizophrenia. Establishes temporal normalization as a necessary preprocessing step before amplitude-based connectivity analysis in clinical populations.

Lead AuthorSignal BalanceSchizophreniaDTW Normalization
bioRxiv · 2025
w/ Kinsey, Soleimani et al.
2025
SEX DIFFERENCES · BIORXIV · 1 CITATION
Neural Flexibility in Metabolic Demand Dynamics Reveals Sex-Specific Differences and Supports Cognition in Late Childhood

Applies timescale-normalized DTW framework to reveal sex-specific differences in neural flexibility and metabolic demand dynamics in late childhood. Links dynamic amplitude balance to domain-specific cognitive support mechanisms.

Co-AuthorNeural FlexibilitySex DifferencesNeurodevelopment
bioRxiv · 2025
Kotoski, Wiafe, Calhoun
2025
MULTIMODAL MRI · BIORXIV + IEEE ISBI · 1 CITATION
Dynamic Inter-Modality Source Coupling Reveals Sex Differences in Brain Structural-Functional Network Connectivity: A Multimodal MRI Study of the ABCD Dataset

Dynamic coupling across structural and functional MRI modalities reveals sex differences in developing brains from the ABCD dataset. Demonstrates operator-based co-modulation analysis generalizes seamlessly across imaging modalities.

Co-AuthorMulti-modalSex DifferencesABCD Dataset
bioRxiv · 2025
IEEE ISBI 2025
Kotoski, Wiafe, Calhoun
2025
STRUCTURAL-FUNCTIONAL · IEEE ISBI 2025
Sex Differences in Coupled Dynamic Functional Connectivity and Structural Brain Morphology: Insights from the ABCD Study

Sex-specific coupling between dynamic functional connectivity and structural morphology in the ABCD pediatric dataset. Dynamic connectivity-morphology co-modulation differs systematically by sex across development.

Co-AuthorStructural-FunctionalSex DifferencesIEEE ISBI
IEEE ISBI 2025
Kotoski, Wiafe, Calhoun
2025
INFANCY · BIORXIV
Spatial Dissimilarity Trajectories Reveal Rapid Functional Network Refinement During Early Infancy

Spatial dissimilarity trajectory analysis reveals rapid functional network refinement in early infancy, demonstrating temporal alignment methods capture neurodevelopmental dynamics across vastly different timescales — from milliseconds to months.

Co-AuthorNeurodevelopmentSpatial DynamicsInfancy
bioRxiv · 2025
Seraji, Shultz, Wiafe et al.
2025
SLEEP & MEMORY · IEEE EMBC 2025
The Role of Sleep Duration and Age in Neural Reactivation and Episodic Memory Performance Across the Adult Lifespan

Sleep duration and aging interact to shape neural reactivation and episodic memory performance. Dynamic network state analysis reveals age-dependent changes in memory consolidation mechanisms across the adult lifespan.

Co-AuthorSleepMemoryIEEE EMBC
IEEE EMBC 2025
Seraji, Soroush, Wiafe et al.
2024
TEMPORAL DYNAMICS · IMAGING NEUROSCIENCE · MIT PRESS · 16 CITATIONS
The Dynamics of Dynamic Time Warping in fMRI Data: A Method to Capture Inter-Network Stretching and Shrinking via Warp Elasticity

Proposes Warp Elasticity — a novel metric using DTW alignment to capture temporal coupling timescales between network pairs. Captures nonlinear stretching and shrinking across brain regions. High replicability, noise robustness, and significant clinical discriminability across independent datasets. 16 citations.

Lead AuthorWarp ElasticityTemporal AlignmentMIT Press
Imaging Neuroscience
MIT Press · 2024
w/ Faghiri, Fu, Miller et al.
2024
WARP ELASTICITY · IEEE ISBI 2024 · 7 CITATIONS
Capturing Stretching and Shrinking of Inter-Network Temporal Coupling in fMRI Via WARP Elasticity

Conference paper introducing warp elasticity for inter-network temporal coupling analysis. Validates warp states as clinically meaningful markers distinguishing healthy controls from schizophrenia with high replicability.

Lead AuthorWarp ElasticityIEEE ISBIfMRI
IEEE ISBI 2024
w/ Faghiri, Fu, Miller, Calhoun
2023
SIGNAL THEORY · IEEE EMBC 2023 · 3 CITATIONS
Phase and Amplitude, Two Sides of Functional Connectivity

Foundational work establishing the amplitude-phase duality in functional connectivity estimation. Demonstrates the correlation between SWPC and phase synchrony is time-dependent — motivating the full communication-theoretic analysis that followed in Brain Connectivity 2025.

Lead AuthorPhase AnalysisFoundational TheoryIEEE EMBC
IEEE EMBC 2023
w/ Fu, Calhoun, Faghiri